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1 #!/usr/bin/env Rscript
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2
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13
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3 options_list <- list(
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22
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4 make_option(c("-i", "--input_temperatures"), action="store", help="Input temperatures csv file"),
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19
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5 make_option(c("-s", "--save_log"), action="store_true", default=FALSE, help="Save R logs"),
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22
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6 make_option(c("-m", "--output_r_log"), action="store", help="Output dataset for R logs"),
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7 make_option(c("-o", "--output"), action="store", help="Output dataset")
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8 )
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9
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13
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10 parser <- OptionParser(usage="%prog [options] file", options_list)
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11 args <- parse_args(parser, positional_arguments=TRUE)
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12 opt <- args$options
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13
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14
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22
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15 if (opt$save_log) {
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16 rlogf <- file(opt$output_r_log, open="wt")
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17 } else {
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18 # Direct R messaging to a temporary file.
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19 rlogf <- file("tmpRLog", open="wt")
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19
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20 }
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22
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21 sink(file=rlogf, type=c("output", "message"), append=FALSE, split=FALSE)
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19
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22
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22
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23 tempdata <- read.csv(opt$input_temperatures)
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24 save(tempdata, file=opt$output)
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