Mercurial > repos > greg > bcftools_sort

diff bcftools_sort.xml @ 1:5486fb1fb923 draft default tip

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Uploaded
author greg
date Tue, 20 Nov 2018 09:50:12 -0500
parents 770db64c4cfc
children
line wrap: on
line diff
--- a/bcftools_sort.xml	Thu Nov 01 10:23:32 2018 -0400
+++ b/bcftools_sort.xml	Tue Nov 20 09:50:12 2018 -0500
@@ -8,11 +8,10 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 @PREPARE_ENV@
-@PREPARE_INPUT_FILE@
 #set temp_dir = 'tmp'
 mkdir $temp_dir &&
 bcftools @EXECUTABLE@
-@INPUT_FILE@
+$input_file
 --output-file '$output_file'
 @OUTPUT_TYPE@
 --temp-dir '$temp_dir'