Mercurial > repos > greg > bcftools_sort

annotate test-data/unsorted.vcf @ 1:5486fb1fb923 draft default tip

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Uploaded
author greg
date Tue, 20 Nov 2018 09:50:12 -0500
parents 770db64c4cfc
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 ##fileformat=VCFv4.0
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2 ##INFO=<ID=XX,Number=1,Type=Integer,Description="Test">
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3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
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4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
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5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
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6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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7 ##FILTER=<ID=Fail,Description="Fail">
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8 ##contig=<ID=1,length=62435964>
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9 ##contig=<ID=2,length=62435964>
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10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
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11 2 140 . A G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
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12 2 160 . TAAAA TA,TC,T 246 PASS DP=10 GT:GQ:DP 0/2:12:10
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13 1 110 . C T,G 1792 Fail XX=11;DP=32 GT:GQ:DP 0/1:245:32
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14 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
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15 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0/1:212:22