Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 105:d5e4dbe5a88f draft

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author greg
date Fri, 08 Dec 2017 08:09:41 -0500
parents de1b2dbdd490
children d0cb6804592c
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104:de1b2dbdd490 105:d5e4dbe5a88f
61 #if str($options_type.dereplicate) == 'yes': 61 #if str($options_type.dereplicate) == 'yes':
62 mv $output_dir/transcripts.cleaned.nr.cds '$output_cleaned_nr_cds'; 62 mv $output_dir/transcripts.cleaned.nr.cds '$output_cleaned_nr_cds';
63 mv $output_dir/transcripts.cleaned.nr.pep '$output_cleaned_nr_pep'; 63 mv $output_dir/transcripts.cleaned.nr.pep '$output_cleaned_nr_pep';
64 #end if 64 #end if
65 #end if 65 #end if
66 fi 66 fi]]></command>
67 ]]></command>
68 <inputs> 67 <inputs>
69 <param name="input" format="fasta" type="data" label="Transcriptome assembly fasta file"/> 68 <param name="input" format="fasta" type="data" label="Transcriptome assembly fasta file"/>
70 <conditional name="prediction_method_cond"> 69 <conditional name="prediction_method_cond">
71 <param name="prediction_method" type="select" label="Coding regions prediction method"> 70 <param name="prediction_method" type="select" label="Coding regions prediction method">
72 <option value="transdecoder" selected="true">TransDecoder</option> 71 <option value="transdecoder" selected="true">TransDecoder</option>