Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 109:c69c1a21ce0e draft

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Uploaded
author greg
date Fri, 08 Dec 2017 11:13:45 -0500
parents 0bc8487c0e2e
children e2b575f2d346
comparison
equal deleted inserted replaced
108:0bc8487c0e2e 109:c69c1a21ce0e
47 #if str($options_type.dereplicate) == 'yes': 47 #if str($options_type.dereplicate) == 'yes':
48 cp proc.log '$output_cleaned_nr_cds'; 48 cp proc.log '$output_cleaned_nr_cds';
49 cp proc.log '$output_cleaned_nr_pep'; 49 cp proc.log '$output_cleaned_nr_pep';
50 #end if 50 #end if
51 #end if 51 #end if
52 exit(1);
52 else 53 else
53 mv $output_dir/transcripts.cds '$output_cds'; 54 mv $output_dir/transcripts.cds '$output_cds';
54 mv $output_dir/transcripts.pep '$output_pep'; 55 mv $output_dir/transcripts.pep '$output_pep';
55 mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds'; 56 mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds';
56 mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep'; 57 mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep';