Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 67:a6de38610e0d draft

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Uploaded
author greg
date Wed, 24 May 2017 13:30:44 -0400
parents 09ae3a0d7273
children 338dfc33b7a7
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66:09ae3a0d7273 67:a6de38610e0d
89 <param name="min_length" type="integer" value="200" label="Minimum sequence length"/> 89 <param name="min_length" type="integer" value="200" label="Minimum sequence length"/>
90 </when> 90 </when>
91 </conditional> 91 </conditional>
92 </inputs> 92 </inputs>
93 <outputs> 93 <outputs>
94 <data name="output_pttgf" format="pttgf" label="${tool.name} (targeted gene families) on ${on_string}"> 94 <data name="output_pttgf" format="pttgf" label="Targeted gene families ${tool.name} on ${on_string}">
95 <filter>options_type['options_type_selector'] == 'advanced' and options_type['target_gene_family_assembly_cond']['target_gene_family_assembly'] == 'yes'</filter> 95 <filter>options_type['options_type_selector'] == 'advanced' and options_type['target_gene_family_assembly_cond']['target_gene_family_assembly'] == 'yes'</filter>
96 </data> 96 </data>
97 <data name="output_cds" format="fasta" label="${tool.name} on ${on_string} (transcripts.cds)"/> 97 <data name="output_pep" format="fasta" label="transcripts.pep ${tool.name} on ${on_string}"/>
98 <data name="output_cleaned_cds" format="fasta" label="${tool.name} on ${on_string} (transcripts.cleaned.cds)"/> 98 <data name="output_cleaned_pep" format="fasta" label="transcripts.cleaned.pep ${tool.name} on ${on_string}"/>
99 <data name="output_cleaned_nr_cds" format="fasta" label="${tool.name} on ${on_string} (transcripts.cleaned.nr.cds)"> 99 <data name="output_cleaned_nr_pep" format="fasta" label="transcripts.cleaned.nr.pep ${tool.name} on ${on_string}">
100 <filter>options_type['options_type_selector'] == 'advanced' and options_type['dereplicate'] == 'yes'</filter> 100 <filter>options_type['options_type_selector'] == 'advanced' and options_type['dereplicate'] == 'yes'</filter>
101 </data> 101 </data>
102 <data name="output_cleaned_nr_pep" format="fasta" label="${tool.name} on ${on_string} (transcripts.cleaned.nr.pep)"> 102 <data name="output_cleaned_nr_cds" format="fasta" label="transcripts.cleaned.nr.cds ${tool.name} on ${on_string}">
103 <filter>options_type['options_type_selector'] == 'advanced' and options_type['dereplicate'] == 'yes'</filter> 103 <filter>options_type['options_type_selector'] == 'advanced' and options_type['dereplicate'] == 'yes'</filter>
104 </data> 104 </data>
105 <data name="output_cleaned_pep" format="fasta" label="${tool.name} on ${on_string} (transcripts.cleaned.pep)"/> 105 <data name="output_cleaned_cds" format="fasta" label="transcripts.cleaned.cds ${tool.name} on ${on_string}"/>
106 <data name="output_pep" format="fasta" label="${tool.name} on ${on_string} (transcripts.pep)"/> 106 <data name="output_cds" format="fasta" label="transcripts.cds ${tool.name} on ${on_string}"/>
107 </outputs> 107 </outputs>
108 <tests> 108 <tests>
109 <test> 109 <test>
110 <param name="input" value="assembly.fasta" ftype="fasta"/> 110 <param name="input" value="assembly.fasta" ftype="fasta"/>
111 <param name="prediction_method" value="transdecoder"/> 111 <param name="prediction_method" value="transdecoder"/>