Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 38:9b5baf12bdbe draft

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Uploaded
author greg
date Fri, 07 Apr 2017 16:11:09 -0400
parents cc4dba9f6ecd
children b0ea1e985a38
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37:cc4dba9f6ecd 38:9b5baf12bdbe
5 </macros> 5 </macros>
6 <expand macro="requirements_assembly_post_processor" /> 6 <expand macro="requirements_assembly_post_processor" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 AssemblyPostProcesser 10 AssemblyPostProcessor
11 --transcripts '$input' 11 --transcripts '$input'
12 --prediction_method $prediction_method_cond.prediction_method 12 --prediction_method $prediction_method_cond.prediction_method
13 #if str($prediction_method_cond.prediction_method) == 'estscan': 13 #if str($prediction_method_cond.prediction_method) == 'estscan':
14 --score_matrices '$score_matrices' 14 --score_matrices '$score_matrices'
15 #end if 15 #end if