Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 26:9a41bbe28c38 draft

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Uploaded
author greg
date Thu, 02 Mar 2017 10:28:42 -0500
parents 9cf3696f75c5
children 77fe1183f3e3
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25:9cf3696f75c5 26:9a41bbe28c38
11 <regex match="Error:" /> 11 <regex match="Error:" />
12 <regex match="Exception:" /> 12 <regex match="Exception:" />
13 </stdio> 13 </stdio>
14 <command> 14 <command>
15 <![CDATA[ 15 <![CDATA[
16 #import os
17 AssemblyPostProcesser 16 AssemblyPostProcesser
18 --transcripts '$input' 17 --transcripts '$input'
19 --prediction_method $prediction_method_cond.prediction_method 18 --prediction_method $prediction_method_cond.prediction_method
20 #if str($prediction_method_cond.prediction_method) == 'estscan': 19 #if str($prediction_method_cond.prediction_method) == 'estscan':
21 --score_matrices '$score_matrices' 20 --score_matrices '$score_matrices'