Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 27:77fe1183f3e3 draft

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author greg
date Fri, 03 Mar 2017 11:19:25 -0500
parents 9a41bbe28c38
children eda72de47171
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26:9a41bbe28c38 27:77fe1183f3e3
19 #if str($prediction_method_cond.prediction_method) == 'estscan': 19 #if str($prediction_method_cond.prediction_method) == 'estscan':
20 --score_matrices '$score_matrices' 20 --score_matrices '$score_matrices'
21 #end if 21 #end if
22 #if str($options_type.options_type_selector) == 'advanced': 22 #if str($options_type.options_type_selector) == 'advanced':
23 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes': 23 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
24 --config_dir '$options_type.target_gene_family_assembly_cond.scaffold.fields.path'
25 --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups' 24 --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups'
26 --scaffold '$options_type.target_gene_family_assembly_cond.scaffold.fields.path' 25 --scaffold '$options_type.target_gene_family_assembly_cond.scaffold.fields.path'
27 --method '$options_type.target_gene_family_assembly_cond.method' 26 --method '$options_type.target_gene_family_assembly_cond.method'
28 #end if 27 #end if
29 --gap_trimming $options_type.gap_trimming 28 --gap_trimming $options_type.gap_trimming