Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 103:6b071ce71267 draft

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Uploaded
author greg
date Thu, 07 Dec 2017 15:25:30 -0500
parents 62df33ce7eaa
children de1b2dbdd490
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102:62df33ce7eaa 103:6b071ce71267
35 #end if 35 #end if
36 --num_threads \${GALAXY_SLOTS:-4} 36 --num_threads \${GALAXY_SLOTS:-4}
37 &>proc.log 37 &>proc.log
38 && if [[ $? -ne 0 ]]; then 38 && if [[ $? -ne 0 ]]; then
39 exec &>/dev/tty; 39 exec &>/dev/tty;
40 cat proc.log >&2; 40 cat proc.log;
41 fi 41 fi
42 && mv $output_dir/transcripts.cds '$output_cds' 42 && mv $output_dir/transcripts.cds '$output_cds'
43 && mv $output_dir/transcripts.pep '$output_pep' 43 && mv $output_dir/transcripts.pep '$output_pep'
44 && mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds' 44 && mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds'
45 && mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep' 45 && mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep'