Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 89:69f34ef8bfab draft

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Uploaded
author greg
date Wed, 25 Oct 2017 10:30:17 -0400
parents a9ca872be416
children 7dc44a577c88
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88:a9ca872be416 89:69f34ef8bfab
30 --dereplicate true 30 --dereplicate true
31 #end if 31 #end if
32 --min_length $options_type.min_length 32 --min_length $options_type.min_length
33 #end if 33 #end if
34 --num_threads \${GALAXY_SLOTS:-4} 34 --num_threads \${GALAXY_SLOTS:-4}
35 &>proc.log 35 1>&2
36 && mv $output_dir/transcripts.cds '$output_cds' 36 && mv $output_dir/transcripts.cds '$output_cds'
37 && mv $output_dir/transcripts.pep '$output_pep' 37 && mv $output_dir/transcripts.pep '$output_pep'
38 && mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds' 38 && mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds'
39 && mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep' 39 && mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep'
40 #if str($options_type.options_type_selector) == 'advanced': 40 #if str($options_type.options_type_selector) == 'advanced':