Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 61:5fb9c4fc7c00 draft

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Uploaded
author greg
date Mon, 22 May 2017 11:40:12 -0400
parents 3d2aff5a0c07
children 9eabe9e58fb5
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60:f7a999b3b19c 61:5fb9c4fc7c00
83 <param name="min_length" type="integer" value="200" label="Minimum sequence length"/> 83 <param name="min_length" type="integer" value="200" label="Minimum sequence length"/>
84 </when> 84 </when>
85 </conditional> 85 </conditional>
86 </inputs> 86 </inputs>
87 <outputs> 87 <outputs>
88 <collection name="transcripts" type="list">
89 <discover_datasets pattern="__name__" directory="assemblyPostProcessing_dir" visible="true" ext="fasta" />
90 </collection>
88 <data name="output_pttgf" format="pttgf" label="${tool.name} (targeted gene families) on ${on_string}"> 91 <data name="output_pttgf" format="pttgf" label="${tool.name} (targeted gene families) on ${on_string}">
89 <filter>options_type['options_type_selector'] == 'advanced' and options_type['target_gene_family_assembly_cond']['target_gene_family_assembly'] == 'yes'</filter> 92 <filter>options_type['options_type_selector'] == 'advanced' and options_type['target_gene_family_assembly_cond']['target_gene_family_assembly'] == 'yes'</filter>
90 </data> 93 </data>
91 <collection name="transcripts" type="list">
92 <discover_datasets pattern="__name__" directory="assemblyPostProcessing_dir" visible="true" ext="fasta" />
93 </collection>
94 </outputs> 94 </outputs>
95 <tests> 95 <tests>
96 <test> 96 <test>
97 <param name="input" value="assembly.fasta" ftype="fasta" /> 97 <param name="input" value="assembly.fasta" ftype="fasta" />
98 <param name="prediction_method" value="transdecoder" /> 98 <param name="prediction_method" value="transdecoder" />