Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 9:5a0a049d11aa draft

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author greg
date Tue, 31 Jan 2017 11:23:32 -0500
parents e5110df5314b
children db0c2baf176f
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8:e5110df5314b 9:5a0a049d11aa
20 --score_matrices '$score_matrices' 20 --score_matrices '$score_matrices'
21 #end if 21 #end if
22 #if str($options_type.options_type_selector) == 'advanced': 22 #if str($options_type.options_type_selector) == 'advanced':
23 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes': 23 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
24 --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups' 24 --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups'
25 --scaffold_dir '${GALAXY_DATA_MANAGER_DATA_PATH}/plant_tribes/scaffolds' 25 --scaffold_dir '$options_type.target_gene_family_assembly_cond.scaffold.path'
26 --scaffold '$options_type.target_gene_family_assembly_cond.scaffold' 26 --scaffold '$options_type.target_gene_family_assembly_cond.scaffold'
27 --method '$options_type.target_gene_family_assembly_cond.method' 27 --method '$options_type.target_gene_family_assembly_cond.method'
28 #end if 28 #end if
29 --gap_trimming $options_type.gap_trimming 29 --gap_trimming $options_type.gap_trimming
30 #if str($options_type.strand_specific) == 'yes': 30 #if str($options_type.strand_specific) == 'yes':