Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 48:564163c7afd8 draft

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author greg
date Fri, 05 May 2017 09:30:26 -0400
parents 3227f0f39800
children 5c221f721b95
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47:3227f0f39800 48:564163c7afd8
2 <description>post-processes de novo transcriptome assembly</description> 2 <description>post-processes de novo transcriptome assembly</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_assembly_post_processor" /> 6 <expand macro="requirements_assembly_post_processor" />
7 <expand macro="stdio" /> 7 <command detect_errors="exit_code">
8 <command>
9 <![CDATA[ 8 <![CDATA[
10 python $__tool_directory__/assembly_post_processor.py 9 python $__tool_directory__/assembly_post_processor.py
11 --transcripts '$input' 10 --transcripts '$input'
12 --prediction_method $prediction_method_cond.prediction_method 11 --prediction_method $prediction_method_cond.prediction_method
13 #if str($prediction_method_cond.prediction_method) == 'estscan': 12 #if str($prediction_method_cond.prediction_method) == 'estscan':