Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 2:4eb05d406410 draft

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author greg
date Mon, 19 Dec 2016 09:48:31 -0500
parents 974edd8437e2
children d651432961fb
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1:974edd8437e2 2:4eb05d406410
1 <tool id="plant_tribes_assembly_post_processor" name="PlantTribes AssemblyPostProcessor" version="1.0.0"> 1 <tool id="plant_tribes_assembly_post_processor" name="AssemblyPostProcessor" version="1.0.0">
2 <description>pipeline</description> 2 <description>pipeline</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.2">plant_tribes_assembly_post_processor</requirement> 4 <requirement type="package" version="0.2">plant_tribes_assembly_post_processor</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
31 #if str($options_type.dereplicate) == 'yes': 31 #if str($options_type.dereplicate) == 'yes':
32 --dereplicate 32 --dereplicate
33 #end if 33 #end if
34 --min_length $options_type.min_length 34 --min_length $options_type.min_length
35 #end if 35 #end if
36 --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds"
36 --num_threads \${GALAXY_SLOTS:-4} 37 --num_threads \${GALAXY_SLOTS:-4}
37 ]]> 38 ]]>
38 </command> 39 </command>
39 <inputs> 40 <inputs>
40 <param name="input" format="fasta" type="data" label="De novo transcriptome assembly fasta file"/> 41 <param name="input" format="fasta" type="data" label="De novo transcriptome assembly fasta file"/>