Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 56:3d2aff5a0c07 draft

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author greg
date Mon, 22 May 2017 10:16:01 -0400
parents 5c221f721b95
children 5fb9c4fc7c00
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55:5c221f721b95 56:3d2aff5a0c07
11 --prediction_method $prediction_method_cond.prediction_method 11 --prediction_method $prediction_method_cond.prediction_method
12 #if str($prediction_method_cond.prediction_method) == 'estscan': 12 #if str($prediction_method_cond.prediction_method) == 'estscan':
13 --score_matrices '$score_matrices' 13 --score_matrices '$score_matrices'
14 #end if 14 #end if
15 #if str($options_type.options_type_selector) == 'advanced': 15 #if str($options_type.options_type_selector) == 'advanced':
16 #if str($) == 'yes': 16 #set target_gene_family_assembly_cond = $options_type.target_gene_family_assembly_cond
17 #set target_gene_family_assembly_cond = $options_type.target_gene_family_assembly_cond 17 #if str($target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
18 --gene_family_search '$target_gene_family_assembly_cond.orthogroups' 18 --gene_family_search '$target_gene_family_assembly_cond.orthogroups'
19 --output_pttgf $output_pttgf 19 --output_pttgf $output_pttgf
20 --output_pttgf_dir $output_pttgf.files_path 20 --output_pttgf_dir $output_pttgf.files_path
21 --scaffold '$target_gene_family_assembly_cond.scaffold.fields.path' 21 --scaffold '$target_gene_family_assembly_cond.scaffold.fields.path'
22 --method '$target_gene_family_assembly_cond.method' 22 --method '$target_gene_family_assembly_cond.method'