Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 94:33915a72ae4e draft

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Uploaded
author greg
date Thu, 26 Oct 2017 11:39:10 -0400
parents c58892e1a388
children 7801f23bc5d9
comparison
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93:c58892e1a388 94:33915a72ae4e
32 --dereplicate 32 --dereplicate
33 #end if 33 #end if
34 --min_length $options_type.min_length 34 --min_length $options_type.min_length
35 #end if 35 #end if
36 --num_threads \${GALAXY_SLOTS:-4} 36 --num_threads \${GALAXY_SLOTS:-4}
37 &>proc.log
38 && mv $output_dir/transcripts.cds '$output_cds' 37 && mv $output_dir/transcripts.cds '$output_cds'
39 && mv $output_dir/transcripts.pep '$output_pep' 38 && mv $output_dir/transcripts.pep '$output_pep'
40 && mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds' 39 && mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds'
41 && mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep' 40 && mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep'
42 #if str($options_type.options_type_selector) == 'advanced': 41 #if str($options_type.options_type_selector) == 'advanced':