Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 108:0bc8487c0e2e draft

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Uploaded
author greg
date Fri, 08 Dec 2017 11:09:59 -0500
parents 67420bf2013b
children c69c1a21ce0e
comparison
equal deleted inserted replaced
107:67420bf2013b 108:0bc8487c0e2e
32 --dereplicate 32 --dereplicate
33 #end if 33 #end if
34 --min_length $options_type.min_length 34 --min_length $options_type.min_length
35 #end if 35 #end if
36 --num_threads \${GALAXY_SLOTS:-4} 36 --num_threads \${GALAXY_SLOTS:-4}
37 &>proc.log 37 &>proc.log;
38 && if [[ $? -ne 0 ]]; then 38 if [[ $? -ne 0 ]]; then
39 cp proc.log '$output_cds'; 39 cp proc.log '$output_cds';
40 cp proc.log '$output_pep'; 40 cp proc.log '$output_pep';
41 cp proc.log '$output_cleaned_cds'; 41 cp proc.log '$output_cleaned_cds';
42 cp proc.log '$output_cleaned_pep'; 42 cp proc.log '$output_cleaned_pep';
43 #if str($options_type.options_type_selector) == 'advanced': 43 #if str($options_type.options_type_selector) == 'advanced':