Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 99:01ef9d05d455 draft

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Uploaded
author greg
date Fri, 27 Oct 2017 13:23:10 -0400
parents 96e4d7bc2f2a
children 7ca8ab9a46e9
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98:96e4d7bc2f2a 99:01ef9d05d455
150 <param name="orthogroups" value="target_orthos.ids"/> 150 <param name="orthogroups" value="target_orthos.ids"/>
151 <param name="scaffold" value="22Gv1.1"/> 151 <param name="scaffold" value="22Gv1.1"/>
152 <param name="method" value="orthomcl"/> 152 <param name="method" value="orthomcl"/>
153 <param name="dereplicate" value="yes"/> 153 <param name="dereplicate" value="yes"/>
154 <output_collection name="output_targeted_gene_families" type="list"> 154 <output_collection name="output_targeted_gene_families" type="list">
155 <element name="752.faa" file="752.faa" ftype="fasta"/>
156 <element name="752.fasta" file="752.fasta" ftype="fasta"/>
157 <element name="752.fna" file="752.fna" ftype="fasta"/>
158 </output_collection> 155 </output_collection>
159 <output name="output_targeted_gene_families_stats" file="output_targeted_gene_families_stats.tabular" ftype="tabular"/> 156 <output name="output_targeted_gene_families_stats" file="output_targeted_gene_families_stats.tabular" ftype="tabular"/>
160 <output name="output_cds" file="transcripts_tgf.cds" ftype="fasta"/> 157 <output name="output_cds" file="transcripts_tgf.cds" ftype="fasta"/>
161 <output name="output_cleaned_cds" file="transcripts.cleaned_tgf.cds" ftype="fasta"/> 158 <output name="output_cleaned_cds" file="transcripts.cleaned_tgf.cds" ftype="fasta"/>
162 <output name="output_cleaned_nr_cds" file="transcripts_tgf.cleaned.nr.cds" ftype="fasta"/> 159 <output name="output_cleaned_nr_cds" file="transcripts_tgf.cleaned.nr.cds" ftype="fasta"/>