diff unipept.xml @ 1:b65ee881ca64 draft

planemo upload for repository http://unipept.ugent.be/apidocs commit e91b0fe16bf468b34884508652359b91847d1f95
author galaxyp
date Tue, 22 Jan 2019 20:58:28 -0500
parents b33376bf2290
children dca8a1fe0bf3
line wrap: on
line diff
--- a/unipept.xml	Wed Oct 24 14:45:18 2018 -0400
+++ b/unipept.xml	Tue Jan 22 20:58:28 2019 -0500
@@ -228,7 +228,6 @@
             </conditional>
             -->
         </actions>
-peptide,total_protein_count,ec_numbers,ec_protein_counts,ec_names,go_terms,go_protein_counts,go_names
       </data> 
       <data name="output_csv" format="csv" label="${tool.name} ${unipept.api} on ${on_string} csv"> 
         <filter>'csv' in selected_outputs</filter>
@@ -288,7 +287,7 @@
         <output name="output_tsv">
             <assert_contents>
               <has_text text="9606" />
-              <has_text text="9598" />
+              <has_text text="9596" />
             </assert_contents>
         </output>
       </test>
@@ -303,33 +302,33 @@
         <output name="output_tsv">
             <assert_contents>
               <has_text text="sapiens" />
-              <has_text text="troglodytes" />
+              <has_text text="paniscus" />
               <has_text text="Gorilla" />
-              <has_text text="Macaca" />
             </assert_contents>
         </output>
       </test>
       <test>
-        <param name="api" value="pept2lca"/>
+        <param name="api" value="pept2funct"/>
         <param name="fmt" value="tabular"/>
-        <param name="input_tsv" value="tryptic.tsv"/>
+        <param name="input_tsv" value="input.tsv"/>
         <param name="column" value="2"/>
         <param name="extra" value="True"/>
         <param name="names" value="True"/>
         <param name="selected_outputs" value="tsv,ec_tsv,go_tsv,unmatched"/>
         <output name="output_tsv">
             <assert_contents>
-              <has_text text="3.2.1.17" />
+              <has_text text="GO:0004802" />
+              <has_text text="2.2.1.1" />
             </assert_contents>
         </output>
         <output name="output_ec_tsv">
             <assert_contents>
-              <has_text text="3.2.1.17" />
+              <has_text text="2.2.1.1" />
             </assert_contents>
         </output>
         <output name="output_go_tsv">
             <assert_contents>
-              <has_text text="GO:0006412" />
+              <has_text text="GO:0004802" />
             </assert_contents>
         </output>
       </test>