Mercurial > repos > galaxyp > psm_to_sam
diff README.md @ 7:cd69250e1150 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/psm2sam commit 9910ed076e4b8a3f083351b89fa861d0a4a93beb
| author | galaxyp |
|---|---|
| date | Wed, 17 May 2017 20:22:39 -0400 |
| parents | 7e61bb790fad |
| children |
line wrap: on
line diff
--- a/README.md Wed Feb 03 12:38:19 2016 -0500 +++ b/README.md Wed May 17 20:22:39 2017 -0400 @@ -1,15 +1,20 @@ -GalaxyP - PSM to SAM +GalaxyP - PSM2SAM =================== * Home: <https://github.com/galaxyproteomics/tools-galaxyp/> * Galaxy Tool Shed: <http://toolshed.g2.bx.psu.edu/view/galaxyp/psm_to_sam> -* Tool ID: `PSMtoSAM` +* Tool ID: `psm_to_sam` Description ----------- -Generate proBAMr SAM files from IDPicker peptide-spectrum-matches. +The interpretation of proteomics data is significantly enhanced by genomic annotation. +Using proBAMr, peptide-spectrum-matches can be easily reannotated using user-specified gene annotation +schemes and assembled into both protein and gene identifications. Using the genome as a common reference, +proBAMr facilitates seamless proteomics and proteogenomics data integration. ProBAM files can be readily +visualized in genome browsers and thus bring proteomics data analysis to a general audience beyond the +proteomics community. See: @@ -27,7 +32,7 @@ License ------- -Copyright (c) 2016 Vanderbilt University and Authors listed below. +Copyright (c) 2017 Authors listed below. To the extent possible under law, the author(s) have dedicated all copyright and related and neighboring rights to this software to the public domain worldwide. This software is distributed without any warranty. @@ -48,7 +53,6 @@ Authors and contributors: * Matt Chambers <matt.chambers42@gmail.com> - Vanderbilt University Medical Center -* Xiaojing Wang - Vanderbilt University Medical Center +* Xiaojing Wang <xiaojing.wang@bcm.edu> + Baylor Medical College
