Mercurial > repos > galaxyp > percolator

comparison nested_collection.py @ 3:d4b3842dc781 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit b3873302e7bb7917a43b455875208e6e9fcf8f66
author galaxyp
date Sat, 08 Apr 2017 08:22:40 -0400
parents b20ea66c01f0
children 022f2c8d3274
comparison
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2:b20ea66c01f0 3:d4b3842dc781
42 parser.add_argument('--pool-ids', dest='poolids', nargs='+', default=False) 42 parser.add_argument('--pool-ids', dest='poolids', nargs='+', default=False)
43 args = parser.parse_args() 43 args = parser.parse_args()
44 for batchcount, (pool_id, batch) in enumerate(get_batches_of_galaxyfiles( 44 for batchcount, (pool_id, batch) in enumerate(get_batches_of_galaxyfiles(
45 args.realnames, args.batchsize, args.poolids)): 45 args.realnames, args.batchsize, args.poolids)):
46 for fncount, batchfile in enumerate([args.galaxyfiles[index] for index in batch]): 46 for fncount, batchfile in enumerate([args.galaxyfiles[index] for index in batch]):
47 dsetname = '{}_batch{}___inputfn{}.mzid'.format(pool_id, batchcount, fncount) 47 dsetname = '{}_batch{}___inputfn{}.data'.format(pool_id, batchcount, fncount)
48 print('producing', dsetname) 48 print('producing', dsetname)
49 os.symlink(batchfile, dsetname) 49 os.symlink(batchfile, dsetname)
50 50
51 if __name__ == '__main__': 51 if __name__ == '__main__':
52 main() 52 main()