Mercurial > repos > galaxyp > pepquery2_show_sets

diff pepquery2_show_sets.xml @ 1:13f69b2a3ecb draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery2 commit 3f50a508dbb9050be48de5685cec9a82683d8457
author galaxyp
date Sun, 02 Oct 2022 23:49:41 +0000
parents 61049b0e6b66
children
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--- a/pepquery2_show_sets.xml	Wed Sep 28 13:55:27 2022 +0000
+++ b/pepquery2_show_sets.xml	Sun Oct 02 23:49:41 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="pepquery2_show_sets" name="PepQuery Show Sets" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5">
+<tool id="pepquery2_show_sets" name="PepQuery2 Show Sets" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5">
     <description>PepQueryDB datasets, Parameters, PTMs</description>
     <macros>
         <import>macros.xml</import>
@@ -64,6 +64,7 @@
     - *java -jar pepquery-2.0.2.jar -b show_full*
     - These datasets can be used for the **-b** option in **PepQuery**.
     - The parameter_set value can be used in the **-p** option in **PepQuery**.
+    - Columns: NO. dataset_name short_name parameter_set species data_type n_spectra n_ms_file data_link
 
 
 **PepQuery Predefined Parameter Sets**
@@ -78,6 +79,7 @@
     - Shows a table of the PTMs available
     - *java -jar pepquery-2.0.2.jar -printPTM*
     - The mod_id numbers can be used in the **-fixMOD** and **-varMOD** options in **PepQuery**.
+    - Columns: mod_id mod_name mod_mass mod_type mod_category unimod_accession
 
     ]]></help>
     <expand macro="citations" />