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comparison pdm_fdr.xml @ 3:0e8649721600 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pdm_fdr commit c226faaf8abdc713d9e770bc94f8cca2b8dc1389
author galaxyp
date Fri, 27 Sep 2019 17:52:22 -0400
parents 2e5889f6ca44
children
comparison
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2:2e5889f6ca44 3:0e8649721600
1 <tool id="pdm_fdr" name="PDM FDR" version="0.1.0"> 1 <tool id="pdm_fdr" name="PDM FDR" version="0.1.0">
2 <description>recalculate FDR fom precursor mass discrepancy</description> 2 <description>recalculate FDR fom precursor mass discrepancy</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="">R</requirement> 4 <requirement type="package" version="">R</requirement>
5 <requirement type="package" version="">r-stringr</requirement> 5 <requirement type="package" version="">r-stringr</requirement>
6 <requirement type="package" version="">r-argparser</requirement>
7 <requirement type="package" version="">r-codetools</requirement>
6 <requirement type="package" version="">r-runit</requirement> 8 <requirement type="package" version="">r-runit</requirement>
7 </requirements> 9 </requirements>
8 <stdio> 10 <stdio>
9 <exit_code range="1:" /> 11 <exit_code range="1:" />
10 </stdio> 12 </stdio>
27 <option value="PSM_Report" selected="true">PSM_Report</option> 29 <option value="PSM_Report" selected="true">PSM_Report</option>
28 <option value="PMD_FDR_input_file">PMD_FDR_input_file</option> 30 <option value="PMD_FDR_input_file">PMD_FDR_input_file</option>
29 </param> 31 </param>
30 <param argument="--score_field_name" type="text" value="" label="PSM report"> 32 <param argument="--score_field_name" type="text" value="" label="PSM report">
31 <validator type="empty_field"/> 33 <validator type="empty_field"/>
34 <sanitizer>
35 <valid initial="string.printable">
36 </valid>
37 </sanitizer>
32 </param> 38 </param>
33 </inputs> 39 </inputs>
34 <outputs> 40 <outputs>
35 <data name="output_g_fdr" format="tabular" label="${tool.name} on ${on_string} output_g_fdr"/> 41 <data name="output_g_fdr" format="tabular" label="${tool.name} on ${on_string} output_g_fdr"/>
36 <data name="output_i_fdr" format="tabular" label="${tool.name} on ${on_string} output_i_fdr"/> 42 <data name="output_i_fdr" format="tabular" label="${tool.name} on ${on_string} output_i_fdr"/>