Mercurial > repos > galaxyp > package_openms_1_11

comparison tool_dependencies.xml @ 2:50cf95930bb6 draft default tip

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author bgruening
date Sat, 18 Jan 2014 10:57:00 -0500
parents f0f48b09273f
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1:f0f48b09273f 2:50cf95930bb6
4 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="Qt" version="4.8"> 6 <package name="Qt" version="4.8">
7 <repository changeset_revision="64344b23c64c" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="64344b23c64c" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="zlib" version="1.2.8">
10 <repository changeset_revision="12711c8cada7" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
11 </package>
9 <package name="openms" version="1.11.1"> 12 <package name="openms" version="1.11.1">
10 <install version="1.0"> 13 <install version="1.0">
11 <actions> 14 <actions>
12 <action type="download_by_url">http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.11.1/OpenMS-1.11.1.tar.gz</action> 15 <action type="download_by_url">http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.11.1/OpenMS-1.11.1.tar.gz</action>
13
14 <!-- populate the environment variables from the dependend repos --> 16 <!-- populate the environment variables from the dependend repos -->
15 <action type="set_environment_for_install"> 17 <action type="set_environment_for_install">
16 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 18 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
17 <package name="libtool" version="2.4" /> 19 <package name="libtool" version="2.4" />
18 </repository> 20 </repository>
19 <repository changeset_revision="64344b23c64c" name="package_qt_4_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 21 <repository changeset_revision="64344b23c64c" name="package_qt_4_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
20 <package name="Qt" version="4.8 " /> 22 <package name="Qt" version="4.8" />
23 </repository>
24 <repository changeset_revision="12711c8cada7" name="package_zlib_1_2_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
25 <package name="zlib" version="1.2.8" />
21 </repository> 26 </repository>
22 </action> 27 </action>
23 28
24 <action type="change_directory">contrib</action> 29 <action type="change_directory">contrib</action>
25 <action type="shell_command">cmake .</action> 30 <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action>
31 <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action>
32 <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action>
33 <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action>
34 <action type="shell_command">cmake . -DBUILD_TYPE=BOOST</action>
35 <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action>
36 <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action>
37 <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action>
38
26 <action type="change_directory">..</action> 39 <action type="change_directory">..</action>
27 <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action> 40 <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action>
28 <action type="shell_command">make doc_minimal</action> 41 <action type="shell_command">make doc_minimal</action>
29 <action type="shell_command">make install</action> 42 <action type="shell_command">make install</action>
30 <action type="set_environment"> 43 <action type="set_environment">
35 </actions> 48 </actions>
36 </install> 49 </install>
37 <readme> 50 <readme>
38 This package downloads and installs OpenMS. 51 This package downloads and installs OpenMS.
39 http://open-ms.sourceforge.net/ 52 http://open-ms.sourceforge.net/
53
54 Requirements: OpenGL is needed to compile OpenMS. You can find libopengl.so usually in some mesa libraries.
40 </readme> 55 </readme>
41 </package> 56 </package>
42 </tool_dependency> 57 </tool_dependency>