Mercurial > repos > galaxyp > openms_xtandemadapter
diff XTandemAdapter.xml @ 1:091c5c67ae88 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
| author | galaxyp |
|---|---|
| date | Tue, 18 Apr 2017 15:57:36 -0400 |
| parents | 75e0909240d8 |
| children | c1f0d8bf2347 |
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--- a/XTandemAdapter.xml Wed Mar 01 10:04:32 2017 -0500 +++ b/XTandemAdapter.xml Tue Apr 18 15:57:36 2017 -0400 @@ -35,10 +35,20 @@ -fragment_mass_tolerance $param_fragment_mass_tolerance #end if #if $param_precursor_error_units: - -precursor_error_units $param_precursor_error_units + -precursor_error_units + #if " " in str($param_precursor_error_units): + "$param_precursor_error_units" + #else + $param_precursor_error_units + #end if #end if #if $param_fragment_error_units: - -fragment_error_units $param_fragment_error_units + -fragment_error_units + #if " " in str($param_fragment_error_units): + "$param_fragment_error_units" + #else + $param_fragment_error_units + #end if #end if #if $param_min_precursor_charge: -min_precursor_charge $param_min_precursor_charge @@ -47,7 +57,12 @@ -max_precursor_charge $param_max_precursor_charge #end if #if $param_allow_isotope_error: - -allow_isotope_error $param_allow_isotope_error + -allow_isotope_error + #if " " in str($param_allow_isotope_error): + "$param_allow_isotope_error" + #else + $param_allow_isotope_error + #end if #end if #if $rep_param_fixed_modifications: @@ -78,10 +93,20 @@ -minimum_fragment_mz $param_minimum_fragment_mz #end if #if $param_cleavage_site: - -cleavage_site $param_cleavage_site + -cleavage_site + #if " " in str($param_cleavage_site): + "$param_cleavage_site" + #else + $param_cleavage_site + #end if #end if #if $param_output_results: - -output_results $param_output_results + -output_results + #if " " in str($param_output_results): + "$param_output_results" + #else + $param_output_results + #end if #end if #if $param_max_valid_expect: -max_valid_expect $param_max_valid_expect