Mercurial > repos > galaxyp > openms_targetedfileconverter
diff TargetedFileConverter.xml @ 6:caf8fee30220 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Wed, 15 May 2019 07:01:16 -0400 |
| parents | 8d7da01e088a |
| children | c4da32773aad |
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--- a/TargetedFileConverter.xml Mon Feb 12 09:03:42 2018 -0500 +++ b/TargetedFileConverter.xml Wed May 15 07:01:16 2019 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> -<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Targeted Experiments]--> -<tool id="TargetedFileConverter" name="TargetedFileConverter" version="2.2.0"> +<tool id="TargetedFileConverter" name="TargetedFileConverter" version="2.3.0"> <description>Converts different transition files for targeted proteomics / metabolomics analysis.</description> <macros> <token name="@EXECUTABLE@">TargetedFileConverter</token> @@ -10,7 +10,7 @@ <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> - <command>TargetedFileConverter + <command detect_errors="aggressive"><![CDATA[TargetedFileConverter #if $param_in: -in $param_in @@ -48,7 +48,7 @@ -algorithm:force_invalid_mods #end if #end if -</command> +]]></command> <inputs> <param name="param_in" type="data" format="tabular,mrm,pqp,traml" optional="False" label="Input file to convert" help="(-in) <br> See http://www.openms.de/current_doxygen/html/UTILS_TargetedFileConverter.html for format of OpenSWATH transition TSV file or SpectraST MRM file"/> <param name="param_out_type" display="radio" type="select" optional="True" label="Output file type -- default: determined from file extension or content <br>Note: that not all conversion paths work or make sense" help="(-out_type) "> @@ -74,5 +74,5 @@ <help>Converts different transition files for targeted proteomics / metabolomics analysis. -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TargetedFileConverter.html</help> +For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_TargetedFileConverter.html</help> </tool>