diff SpectraSTSearchAdapter.xml @ 7:4727152990a3 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:44:21 -0400
parents caf306f53854
children b0f0e7e233e5
line wrap: on
line diff
--- a/SpectraSTSearchAdapter.xml	Mon Feb 12 08:55:32 2018 -0500
+++ b/SpectraSTSearchAdapter.xml	Wed May 15 06:44:21 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="SpectraSTSearchAdapter" name="SpectraSTSearchAdapter" version="2.2.0.1">
+<tool id="SpectraSTSearchAdapter" name="SpectraSTSearchAdapter" version="2.3.0">
   <description>Interface to the SEARCH Mode of the SpectraST executable</description>
   <macros>
     <token name="@EXECUTABLE@">SpectraSTSearchAdapter</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>SpectraSTSearchAdapter
+  <command detect_errors="aggressive"><![CDATA[SpectraSTSearchAdapter
 
 -spectra_files
   #for token in $param_spectra_files:
@@ -64,7 +64,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_spectra_files" type="data" format="mzml,mzxml,mzData,dta,msp" multiple="true" optional="False" size="30" label="File names(s) of spectra to be searched" help="(-spectra_files) ">
       <sanitizer>
@@ -96,5 +96,5 @@
   <help>Interface to the SEARCH Mode of the SpectraST executable
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpectraSTSearchAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SpectraSTSearchAdapter.html</help>
 </tool>