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comparison SpectraMerger.xml @ 9:42c060691e83 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:52:21 -0400
parents 84ba2c7e5d9b
children 16c739d95626
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8:47962ce33dde 9:42c060691e83
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Signal processing and preprocessing]--> 3 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
4 <tool id="SpectraMerger" name="SpectraMerger" version="2.2.0"> 4 <tool id="SpectraMerger" name="SpectraMerger" version="2.3.0">
5 <description>Merges spectra (each MS level separately), increasing S/N ratios.</description> 5 <description>Merges spectra (each MS level separately), increasing S/N ratios.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">SpectraMerger</token> 7 <token name="@EXECUTABLE@">SpectraMerger</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SpectraMerger 13 <command detect_errors="aggressive"><![CDATA[SpectraMerger
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
110 #end if 110 #end if
111 #if $adv_opts.param_algorithm_average_gaussian_cutoff: 111 #if $adv_opts.param_algorithm_average_gaussian_cutoff:
112 -algorithm:average_gaussian:cutoff $adv_opts.param_algorithm_average_gaussian_cutoff 112 -algorithm:average_gaussian:cutoff $adv_opts.param_algorithm_average_gaussian_cutoff
113 #end if 113 #end if
114 #end if 114 #end if
115 </command> 115 ]]></command>
116 <inputs> 116 <inputs>
117 <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file" help="(-in) "/> 117 <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file" help="(-in) "/>
118 <param name="param_merging_method" display="radio" type="select" optional="False" value="average_gaussian" label="Method of merging which should be used" help="(-merging_method) "> 118 <param name="param_merging_method" display="radio" type="select" optional="False" value="average_gaussian" label="Method of merging which should be used" help="(-merging_method) ">
119 <option value="average_gaussian" selected="true">average_gaussian</option> 119 <option value="average_gaussian" selected="true">average_gaussian</option>
120 <option value="average_tophat">average_tophat</option> 120 <option value="average_tophat">average_tophat</option>
171 <data name="param_out" format="mzml"/> 171 <data name="param_out" format="mzml"/>
172 </outputs> 172 </outputs>
173 <help>Merges spectra (each MS level separately), increasing S/N ratios. 173 <help>Merges spectra (each MS level separately), increasing S/N ratios.
174 174
175 175
176 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraMerger.html</help> 176 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraMerger.html</help>
177 </tool> 177 </tool>