Mercurial > repos > galaxyp > openms_spectrafilterwindowmower

comparison SpectraFilterWindowMower.xml @ 0:0772969401a6 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 10:17:25 -0500
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children e927f4a1aeb6
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-1:000000000000 0:0772969401a6
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Identification]-->
4 <tool id="SpectraFilterWindowMower" name="SpectraFilterWindowMower" version="2.1.0">
5 <description>Applies thresholdfilter to peak spectra.</description>
6 <macros>
7 <token name="@EXECUTABLE@">SpectraFilterWindowMower</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="references"/>
11 <expand macro="stdio"/>
12 <expand macro="requirements"/>
13 <command>SpectraFilterWindowMower
14
15 #if $param_in:
16 -in $param_in
17 #end if
18 #if $param_out:
19 -out $param_out
20 #end if
21 #if $param_algorithm_windowsize:
22 -algorithm:windowsize $param_algorithm_windowsize
23 #end if
24 #if $param_algorithm_peakcount:
25 -algorithm:peakcount $param_algorithm_peakcount
26 #end if
27 #if $param_algorithm_movetype:
28 -algorithm:movetype $param_algorithm_movetype
29 #end if
30 #if $adv_opts.adv_opts_selector=='advanced':
31 #if $adv_opts.param_force:
32 -force
33 #end if
34 #end if
35 </command>
36 <inputs>
37 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
38 <param name="param_algorithm_windowsize" type="float" value="50.0" label="The size of the sliding window along the m/z axis" help="(-windowsize) "/>
39 <param name="param_algorithm_peakcount" type="integer" value="2" label="The number of peaks that should be kept" help="(-peakcount) "/>
40 <param name="param_algorithm_movetype" display="radio" type="select" optional="False" value="slide" label="Whether sliding window (one peak steps) or jumping window (window size steps) should be used" help="(-movetype) ">
41 <option value="slide" selected="true">slide</option>
42 <option value="jump">jump</option>
43 </param>
44 <expand macro="advanced_options">
45 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
46 </expand>
47 </inputs>
48 <outputs>
49 <data name="param_out" format="mzml"/>
50 </outputs>
51 <help>Applies thresholdfilter to peak spectra.
52
53
54 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterWindowMower.html</help>
55 </tool>