Mercurial > repos > galaxyp > openms_spectrafilterthresholdmower

comparison SpectraFilterThresholdMower.xml @ 10:88422d2c839f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:42:31 -0400
parents f03354eda114
children fb3ee5fca62e
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9:d6d6ceecdf06 10:88422d2c839f
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Identification]--> 3 <!--Proposed Tool Section: [Identification]-->
4 <tool id="SpectraFilterThresholdMower" name="SpectraFilterThresholdMower" version="2.2.0"> 4 <tool id="SpectraFilterThresholdMower" name="SpectraFilterThresholdMower" version="2.3.0">
5 <description>Applies thresholdfilter to peak spectra.</description> 5 <description>Applies thresholdfilter to peak spectra.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">SpectraFilterThresholdMower</token> 7 <token name="@EXECUTABLE@">SpectraFilterThresholdMower</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SpectraFilterThresholdMower 13 <command detect_errors="aggressive"><![CDATA[SpectraFilterThresholdMower
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
24 #if $adv_opts.adv_opts_selector=='advanced': 24 #if $adv_opts.adv_opts_selector=='advanced':
25 #if $adv_opts.param_force: 25 #if $adv_opts.param_force:
26 -force 26 -force
27 #end if 27 #end if
28 #end if 28 #end if
29 </command> 29 ]]></command>
30 <inputs> 30 <inputs>
31 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> 31 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
32 <param name="param_algorithm_threshold" type="float" value="0.05" label="Intensity threshold, peaks below this threshold are discarded" help="(-threshold) "/> 32 <param name="param_algorithm_threshold" type="float" value="0.05" label="Intensity threshold, peaks below this threshold are discarded" help="(-threshold) "/>
33 <expand macro="advanced_options"> 33 <expand macro="advanced_options">
34 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> 34 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
38 <data name="param_out" format="mzml"/> 38 <data name="param_out" format="mzml"/>
39 </outputs> 39 </outputs>
40 <help>Applies thresholdfilter to peak spectra. 40 <help>Applies thresholdfilter to peak spectra.
41 41
42 42
43 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterThresholdMower.html</help> 43 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraFilterThresholdMower.html</help>
44 </tool> 44 </tool>