Mercurial > repos > galaxyp > openms_speclibcreator

comparison SpecLibCreator.xml @ 10:ee23e61123e7 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:45:55 -0400
parents cc65fd4731b2
children fdf22a4b1b43
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9:dd845c103e11 10:ee23e61123e7
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="SpecLibCreator" name="SpecLibCreator" version="2.2.0"> 4 <tool id="SpecLibCreator" name="SpecLibCreator" version="2.3.0">
5 <description>Creates an MSP formatted spectral library.</description> 5 <description>Creates an MSP formatted spectral library.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">SpecLibCreator</token> 7 <token name="@EXECUTABLE@">SpecLibCreator</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SpecLibCreator 13 <command detect_errors="aggressive"><![CDATA[SpecLibCreator
14 14
15 #if $param_info: 15 #if $param_info:
16 -info $param_info 16 -info $param_info
17 #end if 17 #end if
18 #if $param_itemseperator: 18 #if $param_itemseperator:
30 #if $adv_opts.adv_opts_selector=='advanced': 30 #if $adv_opts.adv_opts_selector=='advanced':
31 #if $adv_opts.param_force: 31 #if $adv_opts.param_force:
32 -force 32 -force
33 #end if 33 #end if
34 #end if 34 #end if
35 </command> 35 ]]></command>
36 <inputs> 36 <inputs>
37 <param name="param_info" type="data" format="tabular" optional="False" label="Holds id, peptide, retention time etc" help="(-info) "/> 37 <param name="param_info" type="data" format="tabular" optional="False" label="Holds id, peptide, retention time etc" help="(-info) "/>
38 <param name="param_itemseperator" type="text" size="30" value="," label=" Separator between items. e.g. ," help="(-itemseperator) "> 38 <param name="param_itemseperator" type="text" size="30" value="," label=" Separator between items. e.g. ," help="(-itemseperator) ">
39 <sanitizer> 39 <sanitizer>
40 <valid initial="string.printable"> 40 <valid initial="string.printable">
53 <data name="param_out" format="msp"/> 53 <data name="param_out" format="msp"/>
54 </outputs> 54 </outputs>
55 <help>Creates an MSP formatted spectral library. 55 <help>Creates an MSP formatted spectral library.
56 56
57 57
58 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpecLibCreator.html</help> 58 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SpecLibCreator.html</help>
59 </tool> 59 </tool>