Mercurial > repos > galaxyp > openms_simplesearchengine

diff SimpleSearchEngine.xml @ 12:3fce1d2c55a9 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f5fcdd54599554099fb00b1973cc91a766ad246a"
author galaxyp
date Wed, 23 Sep 2020 14:31:41 +0000
parents 13e5e81b3b97
children 0554be90987c
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line diff
--- a/SimpleSearchEngine.xml	Thu Aug 27 23:15:23 2020 +0000
+++ b/SimpleSearchEngine.xml	Wed Sep 23 14:31:41 2020 +0000
@@ -50,15 +50,6 @@
     <section name="Search" title="" help="" expanded="false">
       <param name="enzyme" argument="-Search:enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help="">
         <option value="Trypsin" selected="true">Trypsin</option>
-        <option value="leukocyte elastase">leukocyte elastase</option>
-        <option value="proline endopeptidase">proline endopeptidase</option>
-        <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
-        <option value="Alpha-lytic protease">Alpha-lytic protease</option>
-        <option value="2-iodobenzoate">2-iodobenzoate</option>
-        <option value="iodosobenzoate">iodosobenzoate</option>
-        <option value="Asp-N/B">Asp-N/B</option>
-        <option value="Asp-N_ambic">Asp-N_ambic</option>
-        <option value="Arg-C/P">Arg-C/P</option>
         <option value="staphylococcal protease/D">staphylococcal protease/D</option>
         <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option>
         <option value="Glu-C+P">Glu-C+P</option>
@@ -68,20 +59,29 @@
         <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option>
         <option value="no cleavage">no cleavage</option>
         <option value="unspecific cleavage">unspecific cleavage</option>
+        <option value="Arg-C/P">Arg-C/P</option>
+        <option value="proline endopeptidase">proline endopeptidase</option>
+        <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
+        <option value="Alpha-lytic protease">Alpha-lytic protease</option>
+        <option value="2-iodobenzoate">2-iodobenzoate</option>
+        <option value="iodosobenzoate">iodosobenzoate</option>
+        <option value="Asp-N/B">Asp-N/B</option>
+        <option value="Asp-N_ambic">Asp-N_ambic</option>
         <option value="Asp-N">Asp-N</option>
         <option value="Chymotrypsin">Chymotrypsin</option>
         <option value="Chymotrypsin/P">Chymotrypsin/P</option>
         <option value="CNBr">CNBr</option>
         <option value="Formic_acid">Formic_acid</option>
+        <option value="Lys-C">Lys-C</option>
         <option value="Arg-C">Arg-C</option>
-        <option value="TrypChymo">TrypChymo</option>
         <option value="Trypsin/P">Trypsin/P</option>
         <option value="V8-DE">V8-DE</option>
         <option value="V8-E">V8-E</option>
-        <option value="Lys-C">Lys-C</option>
+        <option value="leukocyte elastase">leukocyte elastase</option>
         <option value="Lys-N">Lys-N</option>
         <option value="Lys-C/P">Lys-C/P</option>
         <option value="PepsinA">PepsinA</option>
+        <option value="TrypChymo">TrypChymo</option>
         <expand macro="list_string_san"/>
       </param>
       <section name="precursor" title="Precursor (Parent Ion) Options" help="" expanded="false">
@@ -5373,8 +5373,6 @@
     <expand macro="manutest_SimpleSearchEngine"/>
   </tests>
   <help><![CDATA[Annotates MS/MS spectra using SimpleSearchEngine.
-
-
-For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_SimpleSearchEngine.html]]></help>
+]]></help>
   <expand macro="references"/>
 </tool>