Mercurial > repos > galaxyp > openms_simplesearchengine
diff SimpleSearchEngine.xml @ 1:0ca8724c404a draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
| author | galaxyp |
|---|---|
| date | Tue, 18 Apr 2017 15:52:58 -0400 |
| parents | 2f4218b98805 |
| children | 2fad35dc953d |
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--- a/SimpleSearchEngine.xml Wed Mar 01 10:10:25 2017 -0500 +++ b/SimpleSearchEngine.xml Tue Apr 18 15:52:58 2017 -0400 @@ -22,19 +22,34 @@ -out $param_out #end if #if $param_enzyme: - -enzyme $param_enzyme + -enzyme + #if " " in str($param_enzyme): + "$param_enzyme" + #else + $param_enzyme + #end if #end if #if $param_precursor_mass_tolerance: -precursor:mass_tolerance $param_precursor_mass_tolerance #end if #if $param_precursor_mass_tolerance_unit: - -precursor:mass_tolerance_unit $param_precursor_mass_tolerance_unit + -precursor:mass_tolerance_unit + #if " " in str($param_precursor_mass_tolerance_unit): + "$param_precursor_mass_tolerance_unit" + #else + $param_precursor_mass_tolerance_unit + #end if #end if #if $param_fragment_mass_tolerance: -fragment:mass_tolerance $param_fragment_mass_tolerance #end if #if $param_fragment_mass_tolerance_unit: - -fragment:mass_tolerance_unit $param_fragment_mass_tolerance_unit + -fragment:mass_tolerance_unit + #if " " in str($param_fragment_mass_tolerance_unit): + "$param_fragment_mass_tolerance_unit" + #else + $param_fragment_mass_tolerance_unit + #end if #end if #if $rep_param_modifications_fixed: