Mercurial > repos > galaxyp > openms_semanticvalidator

comparison SemanticValidator.xml @ 3:1707f652b6a0 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
author galaxyp
date Fri, 14 Jul 2017 19:15:39 -0400
parents 07f2fc0ef1cd
children 50004a331e02
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2:b0dd3db1e8c6 3:1707f652b6a0
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="SemanticValidator" name="SemanticValidator" version="2.1.0"> 4 <tool id="SemanticValidator" name="SemanticValidator" version="2.2.0">
5 <description>SemanticValidator for semantically validating certain XML files.</description> 5 <description>SemanticValidator for semantically validating certain XML files.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">SemanticValidator</token> 7 <token name="@EXECUTABLE@">SemanticValidator</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
28 #end if 28 #end if
29 #end if 29 #end if
30 &gt; $param_stdout 30 &gt; $param_stdout
31 </command> 31 </command>
32 <inputs> 32 <inputs>
33 <param name="param_in" type="data" format="mzid,traml,mzml" optional="False" label="Input file (any xml file)" help="(-in) "/> 33 <param name="param_in" type="data" format="analysisXML,mzml,traml,mzid,mzData,xml" optional="False" label="Input file (any xml file)" help="(-in) "/>
34 <param name="param_mapping_file" type="data" format="" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/> 34 <param name="param_mapping_file" type="data" format="xml" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/>
35 <param name="param_cv" type="data" format="" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) "> 35 <param name="param_cv" type="data" format="obo" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) ">
36 <sanitizer> 36 <sanitizer>
37 <valid initial="string.printable"> 37 <valid initial="string.printable">
38 <remove value="'"/> 38 <remove value="'"/>
39 <remove value="&quot;"/> 39 <remove value="&quot;"/>
40 </valid> 40 </valid>