diff RTPredict.xml @ 11:72a2443b70ef draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:51:33 -0400
parents 1a08ce339679
children
line wrap: on
line diff
--- a/RTPredict.xml	Mon Feb 12 08:58:32 2018 -0500
+++ b/RTPredict.xml	Wed May 15 06:51:33 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Peptide property prediction]-->
-<tool id="RTPredict" name="RTPredict" version="2.2.0">
+<tool id="RTPredict" name="RTPredict" version="2.3.0">
   <description>Predicts retention times for peptides using a model trained by RTModel.</description>
   <macros>
     <token name="@EXECUTABLE@">RTPredict</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>RTPredict
+  <command detect_errors="aggressive"><![CDATA[RTPredict
 
 #if $param_in_id:
   -in_id $param_in_id
@@ -53,7 +53,7 @@
   -out_id:rewrite_peptideidentification_rtmz
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in_id" type="data" format="idxml" optional="True" label="Peptides with precursor information" help="(-in_id) "/>
     <param name="param_in_text" type="data" format="txt" optional="True" label="Peptides as text-based file" help="(-in_text) "/>
@@ -76,5 +76,5 @@
   <help>Predicts retention times for peptides using a model trained by RTModel.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_RTPredict.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_RTPredict.html</help>
 </tool>