Mercurial > repos > galaxyp > openms_rtpredict
diff RTPredict.xml @ 3:1a08ce339679 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
| author | galaxyp |
|---|---|
| date | Fri, 14 Jul 2017 19:15:25 -0400 |
| parents | faff4531921f |
| children | 72a2443b70ef |
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--- a/RTPredict.xml Thu Apr 27 13:09:37 2017 -0400 +++ b/RTPredict.xml Fri Jul 14 19:15:25 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Peptide property prediction]--> -<tool id="RTPredict" name="RTPredict" version="2.1.0"> +<tool id="RTPredict" name="RTPredict" version="2.2.0"> <description>Predicts retention times for peptides using a model trained by RTModel.</description> <macros> <token name="@EXECUTABLE@">RTPredict</token> @@ -18,6 +18,12 @@ #if $param_in_text: -in_text $param_in_text #end if +#if $param_in_oligo_params: + -in_oligo_params $param_in_oligo_params +#end if +#if $param_in_oligo_trainset: + -in_oligo_trainset $param_in_oligo_trainset +#end if #if $param_svm_model: -svm_model $param_svm_model #end if @@ -51,6 +57,8 @@ <inputs> <param name="param_in_id" type="data" format="idxml" optional="True" label="Peptides with precursor information" help="(-in_id) "/> <param name="param_in_text" type="data" format="txt" optional="True" label="Peptides as text-based file" help="(-in_text) "/> + <param name="param_in_oligo_params" type="data" format="paramXML" optional="True" label="input file with additional model parameters when using the OLIGO kernel" help="(-in_oligo_params) "/> + <param name="param_in_oligo_trainset" type="data" format="txt" optional="True" label="input file with the used training dataset when using the OLIGO kernel" help="(-in_oligo_trainset) "/> <param name="param_svm_model" type="data" format="txt" optional="False" label="svm model in libsvm format (can be produced by RTModel)" help="(-svm_model) "/> <param name="param_total_gradient_time" type="float" min="1e-05" optional="True" value="1.0" label="The time (in seconds) of the gradient (peptide RT prediction)" help="(-total_gradient_time) "/> <expand macro="advanced_options">