--- a/PTModel.xml	Mon Feb 12 09:02:23 2018 -0500
+++ b/PTModel.xml	Wed May 15 06:58:31 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Peptide property prediction]-->
-<tool id="PTModel" name="PTModel" version="2.2.0">
+<tool id="PTModel" name="PTModel" version="2.3.0">
   <description>Trains a model for the prediction of proteotypic peptides from a training set.</description>
   <macros>
     <token name="@EXECUTABLE@">PTModel</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>PTModel
+  <command detect_errors="aggressive"><![CDATA[PTModel
 
 #if $param_in_positive:
   -in_positive $param_in_positive
@@ -117,7 +117,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in_positive" type="data" format="idxml" optional="False" label="input file with positive examples" help="(-in_positive) "/>
     <param name="param_in_negative" type="data" format="idxml" optional="False" label="input file with negative examples" help="(-in_negative) "/>
@@ -166,5 +166,5 @@
   <help>Trains a model for the prediction of proteotypic peptides from a training set.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PTModel.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_PTModel.html</help>
 </tool>