diff ProteinResolver.xml @ 1:df637a1ed4ca draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author galaxyp
date Tue, 18 Apr 2017 15:49:38 -0400
parents 4e9f2061888d
children e62c55afeae4
line wrap: on
line diff
--- a/ProteinResolver.xml	Wed Mar 01 10:08:31 2017 -0500
+++ b/ProteinResolver.xml	Tue Apr 18 15:49:38 2017 -0400
@@ -44,7 +44,12 @@
   -resolver:min_length $param_resolver_min_length
 #end if
 #if $param_resolver_enzyme:
-  -resolver:enzyme $param_resolver_enzyme
+  -resolver:enzyme
+  #if " " in str($param_resolver_enzyme):
+    "$param_resolver_enzyme"
+  #else
+    $param_resolver_enzyme
+  #end if
 #end if
 #if $param_designer_experiment:
   -designer:experiment     "$param_designer_experiment"
@@ -53,7 +58,12 @@
   -designer:file     "$param_designer_file"
 #end if
 #if $param_designer_separator:
-  -designer:separator $param_designer_separator
+  -designer:separator
+  #if " " in str($param_designer_separator):
+    "$param_designer_separator"
+  #else
+    $param_designer_separator
+  #end if
 #end if
 #if $adv_opts.adv_opts_selector=='advanced':
     #if $adv_opts.param_force: