Mercurial > repos > galaxyp > openms_proteinresolver

comparison readme.md @ 7:d74b0cf9920d draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8d70dbb6c61659d5ced433b168a2a4e32c9af677
author galaxyp
date Fri, 18 Aug 2017 14:55:05 -0400
parents e62c55afeae4
children e067f301486b
comparison
equal deleted inserted replaced
6:3b67366db8cb 7:d74b0cf9920d
67 in_type executable myrimatch_executable \ 67 in_type executable myrimatch_executable \
68 fido_executable fidocp_executable \ 68 fido_executable fidocp_executable \
69 omssa_executable pepnovo_executable \ 69 omssa_executable pepnovo_executable \
70 xtandem_executable param_model_directory \ 70 xtandem_executable param_model_directory \
71 java_executable java_memory java_permgen \ 71 java_executable java_memory java_permgen \
72 r_executable rt_concat_trafo_out \
72 -f /PATH/TO/filetypes.txt -m /PATH/TO/macros.xml \ 73 -f /PATH/TO/filetypes.txt -m /PATH/TO/macros.xml \
73 -s PATH/TO/SKIP_TOOLS_FILES.txt 74 -s PATH/TO/SKIP_TOOLS_FILES.txt
74 ``` 75 ```
75 76
76 77
115 116
116 [...] 117 [...]
117 ]]> 118 ]]>
118 ``` 119 ```
119 120
121 * In `MetaProSIP.xml` add `R` as a requirement:
122
123 ```
124 <expand macro="requirements">
125 <requirement type="package" version="3.3.1">r-base</requirement>
126 </expand>
127 ```
128
120 * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where): 129 * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where):
121 130
122 ``` 131 ```
123 <command><![CDATA[ 132 <command><![CDATA[
124 133