--- a/ProteinInference.xml	Mon Feb 12 08:40:38 2018 -0500
+++ b/ProteinInference.xml	Wed May 15 05:22:08 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Identification]-->
-<tool id="ProteinInference" name="ProteinInference" version="2.2.0">
+<tool id="ProteinInference" name="ProteinInference" version="2.3.0">
   <description>Protein inference based on the number of identified peptides.</description>
   <macros>
     <token name="@EXECUTABLE@">ProteinInference</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>ProteinInference
+  <command detect_errors="aggressive"><![CDATA[ProteinInference
 
 #if $param_in:
   -in $param_in
@@ -32,7 +32,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="idxml" optional="False" label="input file" help="(-in) "/>
     <param name="param_min_peptides_per_protein" type="integer" min="1" optional="True" value="2" label="Minimal number of peptides needed for a protein identification" help="(-min_peptides_per_protein) "/>
@@ -48,5 +48,5 @@
   <help>Protein inference based on the number of identified peptides.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ProteinInference.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ProteinInference.html</help>
 </tool>