Mercurial > repos > galaxyp > openms_precursorionselector

comparison PrecursorIonSelector.xml @ 12:d60f780d41a7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:48:16 -0400
parents e2785d77ac17
children 877331a27660
comparison
equal deleted inserted replaced
11:fdea768a1b05 12:d60f780d41a7
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Targeted Experiments]--> 3 <!--Proposed Tool Section: [Targeted Experiments]-->
4 <tool id="PrecursorIonSelector" name="PrecursorIonSelector" version="2.2.0"> 4 <tool id="PrecursorIonSelector" name="PrecursorIonSelector" version="2.3.0">
5 <description>PrecursorIonSelector</description> 5 <description>PrecursorIonSelector</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">PrecursorIonSelector</token> 7 <token name="@EXECUTABLE@">PrecursorIonSelector</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>PrecursorIonSelector 13 <command detect_errors="aggressive"><![CDATA[PrecursorIonSelector
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
199 #end if 199 #end if
200 #if $adv_opts.param_force: 200 #if $adv_opts.param_force:
201 -force 201 -force
202 #end if 202 #end if
203 #end if 203 #end if
204 </command> 204 ]]></command>
205 <inputs> 205 <inputs>
206 <param name="param_in" type="data" format="featurexml" optional="False" label="Input feature map file (featureXML)" help="(-in) "/> 206 <param name="param_in" type="data" format="featurexml" optional="False" label="Input feature map file (featureXML)" help="(-in) "/>
207 <param name="param_ids" type="data" format="idxml" optional="False" label="file containing results of identification" help="(-ids) "/> 207 <param name="param_ids" type="data" format="idxml" optional="False" label="file containing results of identification" help="(-ids) "/>
208 <param name="param_num_precursors" type="integer" value="1" label="number of precursors to be selected" help="(-num_precursors) "/> 208 <param name="param_num_precursors" type="integer" value="1" label="number of precursors to be selected" help="(-num_precursors) "/>
209 <param name="param_raw_data" type="data" format="mzml" optional="True" label="Input profile data" help="(-raw_data) "/> 209 <param name="param_raw_data" type="data" format="mzml" optional="True" label="Input profile data" help="(-raw_data) "/>
233 <remove value="'"/> 233 <remove value="'"/>
234 <remove value="&quot;"/> 234 <remove value="&quot;"/>
235 </valid> 235 </valid>
236 </sanitizer> 236 </sanitizer>
237 </param> 237 </param>
238 <repeat name="rep_param_fixed_modifications" min="0" max="1" title="param_fixed_modifications"> 238 <repeat name="rep_param_fixed_modifications" min="0" title="param_fixed_modifications">
239 <param name="param_fixed_modifications" type="text" size="30" label="the modifications i.e. Carboxymethyl (C)" help="(-fixed_modifications) "> 239 <param name="param_fixed_modifications" type="text" size="30" label="the modifications i.e. Carboxymethyl (C)" help="(-fixed_modifications) ">
240 <sanitizer> 240 <sanitizer>
241 <valid initial="string.printable"> 241 <valid initial="string.printable">
242 <remove value="'"/> 242 <remove value="'"/>
243 <remove value="&quot;"/> 243 <remove value="&quot;"/>
350 <data name="param_next_feat" format="featurexml"/> 350 <data name="param_next_feat" format="featurexml"/>
351 </outputs> 351 </outputs>
352 <help>PrecursorIonSelector 352 <help>PrecursorIonSelector
353 353
354 354
355 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PrecursorIonSelector.html</help> 355 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_PrecursorIonSelector.html</help>
356 </tool> 356 </tool>