diff PeakPickerIterative.xml @ 12:8dfefd19f00d draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:53:24 -0400
parents 4af44a520f51
children bdd24326fd78
line wrap: on
line diff
--- a/PeakPickerIterative.xml	Mon Feb 12 08:49:00 2018 -0500
+++ b/PeakPickerIterative.xml	Wed May 15 05:53:24 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
-<tool id="PeakPickerIterative" name="PeakPickerIterative" version="2.2.0">
+<tool id="PeakPickerIterative" name="PeakPickerIterative" version="2.3.0">
   <description>Finds mass spectrometric peaks in profile mass spectra.</description>
   <macros>
     <token name="@EXECUTABLE@">PeakPickerIterative</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>PeakPickerIterative
+  <command detect_errors="aggressive"><![CDATA[PeakPickerIterative
 
 #if $param_in:
   -in $param_in
@@ -50,7 +50,7 @@
   -algorithm:check_width_internally
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
     <param name="param_algorithm_signal_to_noise_" type="float" value="1.0" label="Signal to noise value, each peak is required to be above this value (turn off by setting it to 0.0)" help="(-signal_to_noise_) "/>
@@ -72,5 +72,5 @@
   <help>Finds mass spectrometric peaks in profile mass spectra.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_PeakPickerIterative.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_PeakPickerIterative.html</help>
 </tool>