Mercurial > repos > galaxyp > openms_peakpickerhires
diff PeakPickerHiRes.xml @ 12:d10d78890243 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
---|---|
date | Wed, 15 May 2019 06:52:44 -0400 |
parents | 752bfe4206f8 |
children | 083295b423ac |
line wrap: on
line diff
--- a/PeakPickerHiRes.xml Mon Feb 12 08:58:55 2018 -0500 +++ b/PeakPickerHiRes.xml Wed May 15 06:52:44 2019 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> -<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Signal processing and preprocessing]--> -<tool id="PeakPickerHiRes" name="PeakPickerHiRes" version="2.2.0"> +<tool id="PeakPickerHiRes" name="PeakPickerHiRes" version="2.3.0"> <description>Finds mass spectrometric peaks in profile mass spectra.</description> <macros> <token name="@EXECUTABLE@">PeakPickerHiRes</token> @@ -10,7 +10,7 @@ <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> - <command>PeakPickerHiRes + <command detect_errors="aggressive"><![CDATA[PeakPickerHiRes #if $param_in: -in $param_in @@ -97,7 +97,7 @@ -algorithm:SignalToNoise:noise_for_empty_window $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window #end if #end if -</command> +]]></command> <inputs> <param name="param_in" type="data" format="mzml" optional="False" label="input profile data file" help="(-in) "/> <param name="param_algorithm_signal_to_noise" type="float" min="0.0" optional="True" value="0.0" label="Minimal signal-to-noise ratio for a peak to be picked (0.0 disables SNT estimation!)" help="(-signal_to_noise) "/> @@ -145,5 +145,5 @@ <help>Finds mass spectrometric peaks in profile mass spectra. -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PeakPickerHiRes.html</help> +For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_PeakPickerHiRes.html</help> </tool>