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annotate tool-data/pepnovo_models.loc.sample @ 17:836cced14315 draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 2adf8edc3de4e1cd3b299b26abb14544d17d0636"
author galaxyp
date Fri, 06 Nov 2020 19:00:59 +0000
parents b52b3f21aaa6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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14
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
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1 # This is a sample file distributed with Galaxy that enables tools
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
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2 # to use pepnovo models
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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3 # The file has three tab separated columns: name, value, and path.
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
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4 # The idea is that there are a number of models in a directory:
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
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5 # - each model directory has a unique name (columns 2 and 0)
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
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6 # - each model can contain a set of models (column 1)
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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7 #
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
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8 # The following example works fo the default models from
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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9 # http://proteomics.ucsd.edu/Software/PepNovo.html (just remove the comment
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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10 # chars and replace DIR_TO_PEPNOVO_MODELS)
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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11
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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12 #default_models CID_IT_TRYP DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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13 #default_models LTQ_COMP DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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14 #default_models DBC4_PEAK DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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15 #default_models CID_IT_TRYP_TAG5 DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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16 #default_models CID_IT_TRYP_TAG6 DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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17 #default_models ITDNV_PEAK DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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18 #default_models CID_IT_TRYP_SCORE DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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19 #default_models CID_IT_TRYP_TAG3 DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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20 #default_models CID_IT_TRYP_DNVPART DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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21 #default_models CID_IT_TRYP_TAG4 DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
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22 #default_models CID_IT_TRYP_DB DIR_TO_PEPNOVO_MODELS
b52b3f21aaa6 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
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23 #default_models CID_IT_TRYP_CSP DIR_TO_PEPNOVO_MODELS