Mercurial > repos > galaxyp > openms_openswathfilesplitter

comparison OpenSwathFileSplitter.xml @ 16:a86191c455d9 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:32:45 +0000
parents 3b7a5393b033
children
comparison
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15:3b7a5393b033 16:a86191c455d9
53 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> 53 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile>
54 </configfiles> 54 </configfiles>
55 <inputs> 55 <inputs>
56 <param name="in" argument="-in" type="data" format="mzml,mzxml" optional="false" label="Input file (SWATH/DIA file)" help=" select mzml,mzxml data sets(s)"/> 56 <param name="in" argument="-in" type="data" format="mzml,mzxml" optional="false" label="Input file (SWATH/DIA file)" help=" select mzml,mzxml data sets(s)"/>
57 <expand macro="adv_opts_macro"> 57 <expand macro="adv_opts_macro">
58 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 58 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
59 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 59 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
60 <expand macro="list_string_san"/> 60 <expand macro="list_string_san"/>
61 </param> 61 </param>
62 </expand> 62 </expand>
63 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 63 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
64 <option value="out_qc_FLAG">out_qc (Enables the test mode (needed for internal use only))</option> 64 <option value="out_qc_FLAG">out_qc (Optional QC meta data (charge distribution in MS1))</option>
65 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 65 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
66 </param> 66 </param>
67 </inputs> 67 </inputs>
68 <outputs> 68 <outputs>
69 <collection type="list" name="outputDirectory" label="${tool.name} on ${on_string}: outputDirectory"> 69 <collection type="list" name="outputDirectory" label="${tool.name} on ${on_string}: outputDirectory">
81 <expand macro="manutest_OpenSwathFileSplitter"/> 81 <expand macro="manutest_OpenSwathFileSplitter"/>
82 </tests> 82 </tests>
83 <help><![CDATA[Splits SWATH files into n files, each containing one window. 83 <help><![CDATA[Splits SWATH files into n files, each containing one window.
84 84
85 85
86 For more information, visit http://www.openms.de/documentation/UTILS_OpenSwathFileSplitter.html]]></help> 86 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_OpenSwathFileSplitter.html]]></help>
87 <expand macro="references"/> 87 <expand macro="references"/>
88 </tool> 88 </tool>