Mercurial > repos > galaxyp > openms_openswathfeaturexmltotsv

comparison OpenSwathFeatureXMLToTSV.xml @ 12:abe55dba3708 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:59:18 -0400
parents 4a8beda5f2dd
children cb14012a541a
comparison
equal deleted inserted replaced
11:9ec7f0c8243b 12:abe55dba3708
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Targeted Experiments]--> 3 <!--Proposed Tool Section: [Targeted Experiments]-->
4 <tool id="OpenSwathFeatureXMLToTSV" name="OpenSwathFeatureXMLToTSV" version="2.2.0"> 4 <tool id="OpenSwathFeatureXMLToTSV" name="OpenSwathFeatureXMLToTSV" version="2.3.0">
5 <description>Converts a featureXML to a mProphet tsv.</description> 5 <description>Converts a featureXML to a mProphet tsv.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">OpenSwathFeatureXMLToTSV</token> 7 <token name="@EXECUTABLE@">OpenSwathFeatureXMLToTSV</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>OpenSwathFeatureXMLToTSV 13 <command detect_errors="aggressive"><![CDATA[OpenSwathFeatureXMLToTSV
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
31 #if $adv_opts.adv_opts_selector=='advanced': 31 #if $adv_opts.adv_opts_selector=='advanced':
32 #if $adv_opts.param_force: 32 #if $adv_opts.param_force:
33 -force 33 -force
34 #end if 34 #end if
35 #end if 35 #end if
36 </command> 36 ]]></command>
37 <inputs> 37 <inputs>
38 <param name="param_in" type="data" format="featurexml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) "> 38 <param name="param_in" type="data" format="featurexml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) ">
39 <sanitizer> 39 <sanitizer>
40 <valid initial="string.printable"> 40 <valid initial="string.printable">
41 <remove value="'"/> 41 <remove value="'"/>
61 <data name="param_out" format="tabular"/> 61 <data name="param_out" format="tabular"/>
62 </outputs> 62 </outputs>
63 <help>Converts a featureXML to a mProphet tsv. 63 <help>Converts a featureXML to a mProphet tsv.
64 64
65 65
66 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathFeatureXMLToTSV.html</help> 66 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathFeatureXMLToTSV.html</help>
67 </tool> 67 </tool>