--- a/OpenSwathDIAPreScoring.xml	Mon Feb 12 08:52:07 2018 -0500
+++ b/OpenSwathDIAPreScoring.xml	Wed May 15 05:59:19 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Targeted Experiments]-->
-<tool id="OpenSwathDIAPreScoring" name="OpenSwathDIAPreScoring" version="2.2.0">
+<tool id="OpenSwathDIAPreScoring" name="OpenSwathDIAPreScoring" version="2.3.0">
   <description>Scoring spectra using the DIA scores.</description>
   <macros>
     <token name="@EXECUTABLE@">OpenSwathDIAPreScoring</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>OpenSwathDIAPreScoring
+  <command detect_errors="aggressive"><![CDATA[OpenSwathDIAPreScoring
 
 #if $param_tr:
   -tr $param_tr
@@ -30,7 +30,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_tr" type="data" format="traml" optional="False" label="transition file" help="(-tr) "/>
     <param name="param_swath_files" type="data" format="mzml" multiple="true" optional="True" size="30" label="Swath files that were used to extract the transitions" help="(-swath_files) If present, SWATH specific scoring will be applied">
@@ -52,5 +52,5 @@
   <help>Scoring spectra using the DIA scores.
 
 
-For more information, visit http://ftp.imp.fu-berlin.de/pub/OpenMS/release-documentation/html/UTILS_OpenSwathDIAPreScoring.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathDIAPreScoring.html</help>
 </tool>