Mercurial > repos > galaxyp > openms_openswathdecoygenerator

comparison OpenSwathDecoyGenerator.xml @ 12:ed62e3f4fd73 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:45:32 -0400
parents a3b02de2992b
children 73c980518ce7
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11:443f85920ebc 12:ed62e3f4fd73
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Targeted Experiments]--> 3 <!--Proposed Tool Section: [Targeted Experiments]-->
4 <tool id="OpenSwathDecoyGenerator" name="OpenSwathDecoyGenerator" version="2.2.0"> 4 <tool id="OpenSwathDecoyGenerator" name="OpenSwathDecoyGenerator" version="2.3.0">
5 <description>Generates decoys according to different models for a specific TraML</description> 5 <description>Generates decoys according to different models for a specific TraML</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">OpenSwathDecoyGenerator</token> 7 <token name="@EXECUTABLE@">OpenSwathDecoyGenerator</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>OpenSwathDecoyGenerator 13 <command detect_errors="aggressive"><![CDATA[OpenSwathDecoyGenerator
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
69 #if $adv_opts.adv_opts_selector=='advanced': 69 #if $adv_opts.adv_opts_selector=='advanced':
70 #if $adv_opts.param_force: 70 #if $adv_opts.param_force:
71 -force 71 -force
72 #end if 72 #end if
73 #end if 73 #end if
74 </command> 74 ]]></command>
75 <inputs> 75 <inputs>
76 <param name="param_in" type="data" format="traml" optional="False" label="input file ('traML')" help="(-in) "/> 76 <param name="param_in" type="data" format="traml" optional="False" label="input file ('traML')" help="(-in) "/>
77 <param name="param_method" type="text" size="30" value="shuffle" label="decoy generation method ('shuffle','pseudo-reverse','reverse','shift')" help="(-method) "> 77 <param name="param_method" type="text" size="30" value="shuffle" label="decoy generation method ('shuffle','pseudo-reverse','reverse','shift')" help="(-method) ">
78 <sanitizer> 78 <sanitizer>
79 <valid initial="string.printable"> 79 <valid initial="string.printable">
126 <data name="param_out" format="traml"/> 126 <data name="param_out" format="traml"/>
127 </outputs> 127 </outputs>
128 <help>Generates decoys according to different models for a specific TraML 128 <help>Generates decoys according to different models for a specific TraML
129 129
130 130
131 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathDecoyGenerator.html</help> 131 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathDecoyGenerator.html</help>
132 </tool> 132 </tool>