Mercurial > repos > galaxyp > openms_openpepxllf

comparison readme.md @ 1:6ef098e58c08 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:08:45 -0400
parents 7acd88e3bf2d
children 805d16740e82
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0:7acd88e3bf2d 1:6ef098e58c08
168 <output name="param_out" file="DecoyDatabase_output.fasta"/> 168 <output name="param_out" file="DecoyDatabase_output.fasta"/>
169 </test> 169 </test>
170 </tests> 170 </tests>
171 ``` 171 ```
172 172
173
174 * `This section might not be up to date. It might be worth trying if these tools will run now.` These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in
175 by the automatic conversion step and are therefore in `tools_blacklist.txt`:
176 * SeedListGenerator
177 * SpecLibSearcher
178 * MapAlignerIdentification
179 * MapAlignerPoseClustering
180 * MapAlignerSpectrum
181 * MapAlignerRTTransformer
182
183 * Additionally cause of lacking dependencies, the following adapters have been removed in `SKIP_TOOLS_FILES.txt` as well: 173 * Additionally cause of lacking dependencies, the following adapters have been removed in `SKIP_TOOLS_FILES.txt` as well:
184 * OMSSAAdapter 174 * OMSSAAdapter
185 * MyrimatchAdapter 175 * MyrimatchAdapter
186 176
187 * Additionally cause of a problematic parameter (-model_directory), the following adapter has been removed: 177 * Additionally cause of a problematic parameter (-model_directory), the following adapter has been removed: